Package index • regutools

All functions
`build_condition()`	Construct logical condition to query database
`connect_database()`	Connect to the regulondb database
`convert_to_biostrings()`	Function to convert output of regulondb queries to Biostrings objects
`convert_to_granges()`	Function to convert output of regulondb queries to GenomicRanges objects
`existing_intervals()`	Constructs a particular logical condition to query database
`existing_partial_match()`	Constructs a logical condition to query database
`get_binding_sites()`	Get the binding sites for a Transcription Factor (TF)
`get_dataset()`	Extract data from RegulonDB
`get_dna_objects()`	Retrieve genomic elements from regulonDB
`get_gene_regulators()`	Get TFs or genes that regulate the genes of interest
`get_gene_synonyms()`	Retrieve gene synonyms
`get_regulatory_network()`	Return complete regulatory network.
`get_regulatory_summary()`	Return summary of gene regulation.
`guess_id()`	Guess gene id type
`list_attributes()`	List attributes/fields from a dataset/table
`list_datasets()`	List available datasets in RegulonDB database
`non_existing_intervals()`	Constructs a logical condition to query database
`plot_dna_objects()`	Plot annotation elements within genomic region
`regulondb-class`	The regulondb class
`show(<regulondb>)`	Methods for regulondb objects
`regulondb()`	Constructor function of a regulondb class
`regulondb_result-class`	The regulondb_results class

Reference