Spatial Transcriptomics: análisis de datos de la plataforma Visium de 10x Genomics con spatialLIBD

# <strong>Spatial Transcriptomics: análisis de datos de la plataforma Visium de 10x Genomics con spatialLIBD</strong>
## <strong>Bioconductor</strong> para datos transcriptómicos de célula única (<strong>scRNA-seq</strong>) – <strong>CDSB2020</strong>
### <a href="http://lcolladotor.github.io/">Leonardo Collado-Torres</a>
### 2020-08-05

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<a rel="license" href="http://creativecommons.org/licenses/by-nc-sa/4.0/"><img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by-nc-sa/4.0/88x31.png" /></a><br />This work is licensed under a <a rel="license" href="http://creativecommons.org/licenses/by-nc-sa/4.0/">Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License</a>.

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.footnote[Descarga los materiales con `usethis::use_course('comunidadbioinfo/cdsb2020')` o revisalos en línea vía [**comunidadbioinfo.github.io/cdsb2020**](http://comunidadbioinfo.github.io/cdsb2020).]

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# `spatialLIBD`

[Diapositivas](https://speakerdeck.com/lcolladotor/spatiallibd-webinar)

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# ¡Gracias!

Las diapositivias fueron hechas con el paquete de R [**xaringan**](https://github.com/yihui/xaringan) y configuradas con [**xaringanthemer**](https://github.com/gadenbuie/xaringanthemer).

Este curso está basado en el libro [**Orchestrating Single Cell Analysis with Bioconductor**](https://osca.bioconductor.org/) de [Aaron Lun](https://www.linkedin.com/in/aaron-lun-869b5894/), [Robert Amezquita](https://robertamezquita.github.io/), [Stephanie Hicks](https://www.stephaniehicks.com/) y [Raphael Gottardo](http://rglab.org), además del [**curso de scRNA-seq para WEHI**](https://drive.google.com/drive/folders/1cn5d-Ey7-kkMiex8-74qxvxtCQT6o72h) creado por [Peter Hickey](https://www.peterhickey.org/).

Puedes encontrar los archivos para este taller en  [comunidadbioinfo/cdsb2020](https://github.com/comunidadbioinfo/cdsb2020).

Instructor: [**Leonardo Collado-Torres**](http://lcolladotor.github.io/).

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# Detalles de la sesión de R

```r
options(width = 120)
sessioninfo::session_info()
```

```
## ─ Session info ───────────────────────────────────────────────────────────────────────────────────────────────────────
##  setting  value                       
##  version  R version 4.0.2 (2020-06-22)
##  os       macOS Catalina 10.15.5      
##  system   x86_64, darwin17.0          
##  ui       X11                         
##  language (EN)                        
##  collate  en_US.UTF-8                 
##  ctype    en_US.UTF-8                 
##  tz       America/New_York            
##  date     2020-08-05                  
## 
## ─ Packages ───────────────────────────────────────────────────────────────────────────────────────────────────────────
##  package        * version date       lib source                            
##  assertthat       0.2.1   2019-03-21 [1] CRAN (R 4.0.0)                    
##  cli              2.0.2   2020-02-28 [1] CRAN (R 4.0.0)                    
##  colorout       * 1.2-2   2020-03-16 [1] Github (jalvesaq/colorout@726d681)
##  crayon           1.3.4   2017-09-16 [1] CRAN (R 4.0.0)                    
##  digest           0.6.25  2020-02-23 [1] CRAN (R 4.0.0)                    
##  evaluate         0.14    2019-05-28 [1] CRAN (R 4.0.0)                    
##  fansi            0.4.1   2020-01-08 [1] CRAN (R 4.0.0)                    
##  glue             1.4.1   2020-05-13 [1] CRAN (R 4.0.0)                    
##  htmltools        0.5.0   2020-06-16 [1] CRAN (R 4.0.2)                    
##  knitr            1.29    2020-06-23 [1] CRAN (R 4.0.0)                    
##  magrittr         1.5     2014-11-22 [1] CRAN (R 4.0.0)                    
##  purrr            0.3.4   2020-04-17 [1] CRAN (R 4.0.0)                    
##  rlang            0.4.7   2020-07-09 [1] CRAN (R 4.0.2)                    
##  rmarkdown        2.3     2020-06-18 [1] CRAN (R 4.0.0)                    
##  sessioninfo      1.1.1   2018-11-05 [1] CRAN (R 4.0.2)                    
##  showtext         0.8-1   2020-05-25 [1] CRAN (R 4.0.2)                    
##  showtextdb       3.0     2020-06-04 [1] CRAN (R 4.0.2)                    
##  stringi          1.4.6   2020-02-17 [1] CRAN (R 4.0.0)                    
##  stringr          1.4.0   2019-02-10 [1] CRAN (R 4.0.0)                    
##  sysfonts         0.8.1   2020-05-08 [1] CRAN (R 4.0.0)                    
##  whisker          0.4     2019-08-28 [1] CRAN (R 4.0.0)                    
##  withr            2.2.0   2020-04-20 [1] CRAN (R 4.0.0)                    
##  xaringan         0.16    2020-03-31 [1] CRAN (R 4.0.0)                    
##  xaringanthemer * 0.3.0   2020-05-04 [1] CRAN (R 4.0.0)                    
##  xfun             0.16    2020-07-24 [1] CRAN (R 4.0.2)                    
##  yaml             2.2.1   2020-02-01 [1] CRAN (R 4.0.0)                    
## 
## [1] /Library/Frameworks/R.framework/Versions/4.0/Resources/library
## [2] /Library/Frameworks/R.framework/Versions/4.0branch/Resources/library
```

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