List available datasets in RegulonDB database

Source: R/list_datasets.R

This function returns a vector of all available tables from a regulondb class.

list_datasets(regulondb)

Arguments

regulondb

A regulondb class.

Value

A character() with the names of the available datasets.

Examples


## Connect to the RegulonDB database if necessary
if (!exists("regulondb_conn")) regulondb_conn <- connect_database()
#> snapshotDate(): 2021-10-20

## Build the regulon db object
e_coli_regulondb <-
    regulondb(
        database_conn = regulondb_conn,
        organism = "E.coli",
        database_version = "1",
        genome_version = "1"
    )

## List the available datasets
list_datasets(e_coli_regulondb)
#> [1] "DNA_OBJECTS"       "GENE"              "NETWORK"          
#> [4] "OPERON"            "PROMOTER"          "REGULONDB_OBJECTS"
#> [7] "TF"                "TU"