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CDSB

Community of Bioinformatics Software Developers

Overview

Welcome to the Community of Bioinformatics Software Developers (CDSB in Spanish)!

We are a group interested in helping members of Latin American countries acquire the necessary skills to contribute to open source software development. R is now used by many industries and has been a long time favorite in academia. As R users grow more familiar with the language, they typically end up writing their own functions and sharing them with others via packages. These packages can be distributed via GitHub or via formal repositories like CRAN and Bioconductor. Bioconductor is a project centered around open source software for bioinformatics made with R that has been helpful to many of us. We want to improve the representation of Latin American countries in open source developer communities to make them more diverse. Thus, our main goal is to help teach Latin Americans how to make R packages and share them via GitHub, CRAN and Bioconductor.

You can find some of our recorded videos available on our YouTube channel.

CDSB2022

CDSB2021 scRNAseq

CDSB2021 workflows

Mini courses RMB 2020-2021

CDSB2020

Interests

  • R
  • Bioinformatics
  • Education
  • Diversity

Skills

that bring us together

R

Bioinformatics

Education

Community

Recent Posts

Thanks to RWeekly for sharing our blog posts with a larger audience!

CS&S Event Fund award announcement

We are delighted to announce that Code for Science and Society has selected our application for their first cohort of Event Fund grant …

The impact of CDSB on me

By Erick Cuevas Fernández, M. Sc., Bioinformatician. Universidad Nacional Autonoma de Mexico. Universidad Autonoma del Estado de …

Latin American communities and organizations: useR!2020 video

This useR!2020 session and video was organized by Laura Acion, Yanina Bellini Saibene, Paola Corrales, and Paloma Rojas Saunero. …

CDSB: the story of a diversity and outreach hotspot in Mexico that hopes to empower local R developers

This blog post was submitted to the R Consortium blog where it was published on 03/18/2020. I have been attending R conferences since …

People

Community

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CDSB

Community of Bioinformatics Software Developers

R, Bioinformatics, Education, Diversity

Board

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Leonardo Collado-Torres, PhD

Investigator

Genomics, R programming, Biostatistics, Teaching, Diversity

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Erick Cuevas-Fernández, MsC

Ph.D. Student

R, Psychiatric Disorders, Machine Learning

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Alejandro Reyes, PhD

Data Scientist/Principal Scientist I

Data Science, Genomics, R, Statistics

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Alejandra Medina Rivera, PhD

Investigator

Gene regulation, Bioinformatics

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Heladia Salgado Osorio

Laboratory Technician

Bioinformatics, Teaching

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Joselyn C. Chávez-Fuentes, Ph.D

Postdoctoral Fellow

Bioinformatics, R programming, Bioconductor, Spatial transcriptomics

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Mirna Vázquez Rosas Landa, PhD

Associate Professor

Bioinformatics, Metagenomes, R packages development

Founders

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Leonardo Collado-Torres, PhD

Investigator

Genomics, R programming, Biostatistics, Teaching, Diversity

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Alejandro Reyes, PhD

Data Scientist/Principal Scientist I

Data Science, Genomics, R, Statistics

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Delfino García-Alonso

Laboratory Technician

Bioinformatics

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Alejandra Medina Rivera, PhD

Investigator

Gene regulation, Bioinformatics

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Heladia Salgado Osorio

Laboratory Technician

Bioinformatics, Teaching

Bioconductor Developer Alumni

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Carmina Barberena-Jonas

Student Intern

Mexican Biobank, Bioinformatics, R programming, Bioconductor, Photography, Surrealist paintings

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Jesus Emiliano Sotelo-Fonseca

MSc student

Plant Biotechnology, Bioinformatics, R programming, Bioconductor

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Joselyn C. Chávez-Fuentes, Ph.D

Postdoctoral Fellow

Bioinformatics, R programming, Bioconductor, Spatial transcriptomics

2023 Instructors

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Leonardo Collado-Torres, PhD

Investigator

Genomics, R programming, Biostatistics, Teaching, Diversity

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Erick Cuevas-Fernández, MsC

Ph.D. Student

R, Psychiatric Disorders, Machine Learning

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Alejandra Medina Rivera, PhD

Investigator

Gene regulation, Bioinformatics

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Andrés Arredondo Cruz

College Student

R Development, Bioinformatics, Metagenomics

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Joselyn C. Chávez-Fuentes, Ph.D

Postdoctoral Fellow

Bioinformatics, R programming, Bioconductor, Spatial transcriptomics

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Laura Gómez-Romero, PhD

Investigator

Genomics, Computational Biology, Human diseases, Teaching

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Mirna Vázquez Rosas Landa, PhD

Associate Professor

Bioinformatics, Metagenomes, R packages development

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Yalbi I. Balderas-Martínez, PhD

Investigator

Genomics, R programming, Biostatistics, Teaching, Bioinformatics

2022 Instructors

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Leonardo Collado-Torres, PhD

Investigator

Genomics, R programming, Biostatistics, Teaching, Diversity

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Erick Cuevas-Fernández, MsC

Ph.D. Student

R, Psychiatric Disorders, Machine Learning

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Alejandra Medina Rivera, PhD

Investigator

Gene regulation, Bioinformatics

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Brett Baker, PhD

Investigator

Ecology, Evolution, Genomic diversity, Computational methods

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Joselyn C. Chávez-Fuentes, Ph.D

Postdoctoral Fellow

Bioinformatics, R programming, Bioconductor, Spatial transcriptomics

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Mirna Vázquez Rosas Landa, PhD

Associate Professor

Bioinformatics, Metagenomes, R packages development

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Yalbi I. Balderas-Martínez, PhD

Investigator

Genomics, R programming, Biostatistics, Teaching, Bioinformatics

2021 Instructors

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Leonardo Collado-Torres, PhD

Investigator

Genomics, R programming, Biostatistics, Teaching, Diversity

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Erick Cuevas-Fernández, MsC

Ph.D. Student

R, Psychiatric Disorders, Machine Learning

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Alejandro Reyes, PhD

Data Scientist/Principal Scientist I

Data Science, Genomics, R, Statistics

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Ángel Escalante, Actuario

Data Scientist

Data Science, R packages development, Data Visualization

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Aurora Labastida Martínez, M.C.

Data analysis specialist

DNA Data analysis, Metagenomics, Transcriptomics

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Alejandra Medina Rivera, PhD

Investigator

Gene regulation, Bioinformatics

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Ana Beatriz Villaseñor Altamirano, PhD

Postdoctoral Research Fellow

Transcriptomics, R programming, Human diseases, Lung diseases, Python, Bioinformatics, Single cell data

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Alejandro Ponce-Mendoza, PhD

Investigator

Numerical Ecology, Data Visualization, Agrobiodiversity

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Citlali Gil Aguillon

Teaching Assistant

Genomics, Bioethics, Evolution, R programming, Teaching, Philosophy, Arts

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Elisa Márquez Zavala, MsC Candidate

Student

Genome-scale metabolic modelling, Rational strain desing, Bioprocess optimization, Teaching, Music

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Joselyn C. Chávez-Fuentes, Ph.D

Postdoctoral Fellow

Bioinformatics, R programming, Bioconductor, Spatial transcriptomics

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Laura Gómez-Romero, PhD

Investigator

Genomics, Computational Biology, Human diseases, Teaching

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Mirna Vázquez Rosas Landa, PhD

Associate Professor

Bioinformatics, Metagenomes, R packages development

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Maria Teresa Ortiz, MA

Data Scientist | Lecturer

Statistical modeling (hierarchical models, spatial statistics, Bayesian networks), Survey design and Survey data analysis, Machine learning, Data visualization

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Ricardo O. Ramírez Flores, BSc

PhD Candidate

Multiomics, Applied Statistics, Meta-analysis, Teaching, Music

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Yalbi I. Balderas-Martínez, PhD

Investigator

Genomics, R programming, Biostatistics, Teaching, Bioinformatics

2020 Instructors

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Leonardo Collado-Torres, PhD

Investigator

Genomics, R programming, Biostatistics, Teaching, Diversity

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Alejandro Reyes, PhD

Data Scientist/Principal Scientist I

Data Science, Genomics, R, Statistics

Avatar

Alejandra Medina Rivera, PhD

Investigator

Gene regulation, Bioinformatics

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Joselyn C. Chávez-Fuentes, Ph.D

Postdoctoral Fellow

Bioinformatics, R programming, Bioconductor, Spatial transcriptomics

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Marcel Ramos Perez, MPH

Bioconductor Core Team Member

Bioconductor Pkg Dev, Genomics, Data Integration, Biostatistics

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Maria Teresa Ortiz, MA

Data Scientist | Lecturer

Statistical modeling (hierarchical models, spatial statistics, Bayesian networks), Survey design and Survey data analysis, Machine learning, Data visualization

2019 Instructors

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Leonardo Collado-Torres, PhD

Investigator

Genomics, R programming, Biostatistics, Teaching, Diversity

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Alejandro Reyes, PhD

Data Scientist/Principal Scientist I

Data Science, Genomics, R, Statistics

Avatar

Alejandra Medina Rivera, PhD

Investigator

Gene regulation, Bioinformatics

Avatar

Maria Teresa Ortiz, MA

Data Scientist | Lecturer

Statistical modeling (hierarchical models, spatial statistics, Bayesian networks), Survey design and Survey data analysis, Machine learning, Data visualization

2018 Instructors

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Leonardo Collado-Torres, PhD

Investigator

Genomics, R programming, Biostatistics, Teaching, Diversity

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Alejandro Reyes, PhD

Data Scientist/Principal Scientist I

Data Science, Genomics, R, Statistics

Avatar

Alejandra Medina Rivera, PhD

Investigator

Gene regulation, Bioinformatics

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Alejandro Ponce-Mendoza, PhD

Investigator

Numerical Ecology, Data Visualization, Agrobiodiversity

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Benilton S Carvalho, PhD

Professor

Computational Biology, Bioinformatics, Microarrays, NGS, HPC

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Maria Teresa Ortiz, MA

Data Scientist | Lecturer

Statistical modeling (hierarchical models, spatial statistics, Bayesian networks), Survey design and Survey data analysis, Machine learning, Data visualization

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Martin Morgan, PhD

Professor of Oncology

Statistical methods in computational biology

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Selene L. Fernandez-Valverde, PhD

Group Leader - Genomicist and bioinformatician

Non-coding RNA, Bioinformatics, Comparative Genomics, Small RNA, Gene Regulation

Contact

Say hi! It’s free. We are a Community interested in learning your opinion, so please get in touch and tell us about your project.